FACoP: Functional Annotation and Classification of Proteins of Prokaryotes
FACoP is a supporting system for FUNAGE-Pro to classify genes for Gene Set Enrichment Analysis. Supported classes are: GO, InterPro(IPR), KEGG-orthology KO, KEGG-pathways, eggNOG, COG, PFAM and KEYWORDS.
This webserver accepts up to 10.000 proteins for annotation
For large projects, a stand-alone version (Linux only) should be used; it can be downloaded here: download

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